Caltech physicists listen closely to black holes ring

New methods will allow for better tests of Einstein's general theory of relativity using LIGO data

Albert Einstein's general theory of relativity describes how the fabric of space and time, or spacetime, is curved in response to mass. Our sun, for example, warps space around us such that planet Earth rolls around the sun like a marble tossed into a funnel (Earth does not fall into the sun due to the Earth's sideways momentum). Dongjun Li

The theory, which was revolutionary at the time it was proposed in 1915, recast gravity as a curving of spacetime. As fundamental as this theory is to the very nature of space around us, physicists say it might not be the end of the story. Instead, they argue that theories of quantum gravity, which attempt to unify general relativity with quantum physics, hold secrets to how our universe works at the deepest levels.

One place to search for signatures of quantum gravity is in the mighty collisions between black holes, where gravity is at its most extreme. Black holes are the densest objects in the universe—their gravity is so strong that they squeeze objects falling into them into spaghetti-like noodles. When two black holes collide and merge into one larger body, they roil space-time around them, sending ripples called gravitational waves outward in all directions.

The National Science Foundation-funded LIGO, managed by Caltech and MIT, has been routinely detecting gravitational waves generated by black hole mergers since 2015 (its partner observatories, Virgo and KAGRA, joined the hunt in 2017 and 2020, respectively). So far, however, the general theory of relativity has passed test after test with no signs of breaking down.

Now, two new Caltech-led papers, in Physical Review X and Physical Review Letters, describe new methods for putting general relativity to even more stringent tests. By looking more closely at the structures of black holes, and the ripples in space-time they produce, scientists are seeking signs of small deviations from general relativity that would hint at the presence of quantum gravity.

"When two black holes merge to produce a bigger black hole, the final black hole rings like a bell," explains Yanbei Chen (Ph.D. '03), a professor of physics at Caltech and a co-author of both studies. "The quality of the ringing, or its timbre, may be different from the predictions of general relativity if certain theories of quantum gravity are correct. Our methods are designed to look for differences in the quality of this ringdown phase, such as the harmonics and overtones, for example."

The first paper, led by Caltech graduate student Dongjun Li, reports a new single equation to describe how black holes would ring within the framework of certain quantum gravity theories, or in what scientists refer to as the beyond-general-relativity regime.

The work builds upon a ground-breaking equation developed 50 years ago by Saul Teukolsky (Ph.D. '73), the Robinson Professor of Theoretical Astrophysics at Caltech. Teukolsky developed a complex equation to better understand how the ripples of space-time geometry propagate around black holes. In contrast to numerical relativity methods, in which supercomputers are required to simultaneously solve many differential equations about general relativity, the Teukolsky equation is much simpler to use and, as Li explains, provides direct physical insight into the problem.

"If one wants to solve all the Einstein equations of a black hole merger to accurately simulate it, they must turn to supercomputers," Li says. "Numerical relativity methods are incredibly important for accurately simulating black hole mergers, and they provide a crucial foundation for interpreting LIGO data. But it is extremely hard for physicists to draw intuitions directly from the numerical results. The Teukolsky equation gives us an intuitive look at what is going on in the ringdown phase."

Li was able to take Teukolsky's equation and adapt it for black holes in the beyond-general-relativity regime for the first time. "Our new equation allows us to model and understand gravitational waves propagating around black holes that are more exotic than Einstein predicted," he says.

The second paper, published in Physical Review Letters, led by Caltech graduate student Sizheng Ma, describes a new way to apply Li's equation to actual data acquired by LIGO and its partners in their next observational run. This data analysis approach uses a series of filters to remove features of a black hole's ringing predicted by general relativity so that potentially subtle, beyond-general-relativity signatures can be revealed.

"We can look for features described by Dongjun's equation in the data that LIGO, Virgo, and KAGRA will collect," Ma says. "Dongjun has found a way to translate a large set of complex equations into just one equation, and this is tremendously helpful. This equation is more efficient and easier to use than methods we used before." Dongjun Li's equation describes how black holes would ring in the beyond-general-relativity regime.

The two studies complement each other well, Li says. "I was initially worried that the signatures my equation predicts would be buried under the multiple overtones and harmonics; fortunately, Sizheng's filters can remove all these known features, which allows us to just focus on the differences," he says.

Chen added: "Working together, Li and Ma's findings can significantly boost our community's ability to probe gravity."

Operation of a skyrmion transistor. a) Skyrmion transistor device geometry. The blue dashed box is a skyrmion channel. The red dashed box acts as a skyrmion generator and the green dashed box is a skyrmion gate. Scale bar, 10 µm. b) From the initial state; c) a skyrmion is generated; and d–f) the skyrmion moves and passes through the skyrmion gate region. g–k) After lowering PMA in the skyrmion gate region by applying a positive gate voltage pulse, k) the generated skyrmion is blocked at the right interface of the skyrmion gate region. l–p) After returning PMA in the skyrmion gate region by applying a negative gate voltage pulse, p) a skyrmion can pass the skyrmion gate region again.
Operation of a skyrmion transistor. a) Skyrmion transistor device geometry. The blue dashed box is a skyrmion channel. The red dashed box acts as a skyrmion generator and the green dashed box is a skyrmion gate. Scale bar, 10 µm. b) From the initial state; c) a skyrmion is generated; and d–f) the skyrmion moves and passes through the skyrmion gate region. g–k) After lowering PMA in the skyrmion gate region by applying a positive gate voltage pulse, k) the generated skyrmion is blocked at the right interface of the skyrmion gate region. l–p) After returning PMA in the skyrmion gate region by applying a negative gate voltage pulse, p) a skyrmion can pass the skyrmion gate region again.

Korea's KRISS propels quantum, AI research with new skyrmion transistors

Skyrmion flow control is expected to accelerate the development of next-generation ultra-low-power devices 

In an era marked by an escalating energy crisis, the world stands on the precipice of a transformative revolution in spintronics technology, promising ultra-low power consumption paired with superior performance. To illustrate the potential, consider this: the power consumed by AlphaGo during its famous Go game in 2016 equaled the daily power use of 100 households. By 2021, Tesla's autonomous driving AI required over ten times that amount of power for learning.

In response to this growing demand, the Korea Research Institute of Standards and Science (KRISS, President Hyun-min Park) has pioneered the world's first transistor capable of controlling skyrmions. This breakthrough paves the way for the development of next-generation ultra-low-power devices and is anticipated to make significant contributions to quantum and AI research.

Skyrmions, arranged in a vortex-like spin structure, are unique because they can be miniaturized to several nanometers, making them movable with exceptionally low power. This characteristic positions them as a crucial element in the evolution of spintronics applications.

The explosive growth of electronic engineering in the 21st century can be traced back to the 1947 invention of the transistor at Bell Laboratories in the United States. Acting as an amplifier and switch for electrical currents, the transistor has been pivotal in the field of electronic engineering. The discovery of the skyrmion in 2009 sparked widespread research into a skyrmion-based transistor, but the absence of essential technology to control the skyrmion movement thwarted these efforts.

This bottleneck has been overcome with KRISS's newly developed skyrmion transistor, which leverages proprietary technology to electronically manage the movement of skyrmions created in magnetic materials. This innovative solution enables the precise control of skyrmion flow or halting, akin to how conventional transistors modulate electric current.

A critical aspect of managing magnetic skyrmion movement lies in controlling magnetic anisotropy, which influences the energy of skyrmions. Previous research endeavored to regulate magnetic anisotropy through oxygen movement within devices but failed to achieve uniform control. Overcoming this challenge, the KRISS Quantum Spin Team developed a groundbreaking method for uniform control of magnetic anisotropy by leveraging hydrogen within aluminum oxide insulators, marking a world-first in the experimental implementation of skyrmion transistors.

This milestone represents yet another foundational technology for spintronic devices, following the institute's 2021 achievement in the generation, deletion, and movement of skyrmions. The advent of the spintronics transistor is set to expedite the development of spintronics-based devices, such as neuromorphic and logic devices, which offer substantial advantages in power consumption, stability, and speed over traditional electronic devices.

Dr. Chan Yong Hwang, a director of the KRISS Quantum Technology Institute, expressed, "Major Korean companies are pivoting their focus to next-generation semiconductors that utilize spintronics to transcend the constraints of current silicon semiconductors. We plan to advance spintronics-related technology further and incorporate them into next-generation semiconductor devices and quantum technology."

Reflecting on the significance of the achievement, Dr. Seungmo Yang, a senior researcher at KRISS, stated, "The transistor ignited the digital revolution of the 20th century. Now, the skyrmion transistor is poised to catalyze a similar transformation, propelling the spintronics technology revolution of the 21st century."

AI to find promising new antibiotic

Scientists at McMaster University and the Massachusetts Institute of Technology have used artificial intelligence to discover a new antibiotic that could be used to fight a deadly, drug-resistant pathogen that strikes vulnerable hospital patients. 
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Jonathan Stokes
Jonathan Stokes

MIT, Mac scientists use AI to find promising new antibiotic to fight evasive hospital superbug

The new process could speed the discovery of other much-needed antibiotics

Scientists at McMaster University and the Massachusetts Institute of Technology have used artificial intelligence to discover a new antibiotic that could be used to fight a deadly, drug-resistant pathogen that strikes vulnerable hospital patients. 

Their process could also speed the discovery of other antibiotics to treat many other challenging bacteria. 

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The researchers were responding to the urgent need for new drugs to treat Acinetobacter baumannii, identified by the World Health Organization as one of the world’s most dangerous antibiotic-resistant bacteria. Notoriously difficult to eradicate, A. baumannii can cause pneumonia, meningitis and infect wounds, all of which can lead to death.

A. baumanni is usually found in hospital settings, where it can survive on surfaces for long periods. The pathogen is able to pick up DNA from other species of bacteria in its environment, including antibiotic-resistance genes.  

In the study, researchers report they used an artificial intelligence algorithm to predict new structural classes of antibacterial molecules and identified a new antibacterial compound, which they have named abaucin.

Discovering new antibiotics against A. baumannii through conventional screening has been challenging. Traditional methods are time-consuming, costly, and limited in scope.

Modern algorithmic approaches can access hundreds of millions of molecules with antibacterial properties, possibly billions.

“This work validates the benefits of machine learning in the search for new antibiotics,” says Jonathan Stokes, lead author on the paper and an assistant professor in McMaster’s Department of Biomedicine & Biochemistry, who conducted the work with James J. Collins, a professor of medical engineering and science at MIT, and McMaster graduate students Gary Liu and Denise Catacutan. Denise Catacutan

“Using AI, we can rapidly explore vast regions of chemical space, significantly increasing the chances of discovering fundamentally new antibacterial molecules,” says Stokes, who belongs to McMaster’s Global Nexus School for Pandemic Prevention and Response.

“AI approaches to drug discovery are here to stay and will continue to be refined,” says Collins, Life Sciences faculty lead at the MIT Abdul Latif Jameel Clinic for Machine Learning in Health. “We know algorithmic models work, now it’s a matter of widely adopting these methods to discover new antibiotics more efficiently and less expensively.”

Abaucin is especially promising, the researchers report, because it only targets A. baumannii, a crucial finding which means the pathogen is less likely to develop drug resistance rapidly, and which could lead to more precise and effective treatments.

Most antibiotics are broad spectrum in nature, meaning they kill all bacteria, disrupting the gut microbiome, which opens the door to a host of serious infections, including C difficile.

“We know broad-spectrum antibiotics are suboptimal and that pathogens have the ability to evolve and adjust to every trick we throw at them,” says Stokes. “AI methods afford us the opportunity to vastly increase the rate at which we discover new antibiotics, and we can do it at a reduced cost. This is an important avenue of exploration for new antibiotic drugs.” 

Credit: Getty Images
Credit: Getty Images

Hopkins Med researchers implement AI to predict which small proteins can bind to cell structures, deliver drugs

Wilmer Eye Institute, Johns Hopkins Medicine researchers say they have used artificial intelligence models and machine-learning algorithms to successfully predict which components of amino acids that make up therapeutic proteins are most likely to safely deliver therapeutic drugs to animal eye cells.  

The project, a collaboration with researchers from the University of Maryland, holds promise for advancing new and more tolerable drug treatments for common chronic blinding eye diseases, including glaucoma and macular degeneration, which affect 3 million and about 20 million people in the United States, respectively. Current drug therapies for these diseases, consisting of multiple daily eyedrops or frequent eye injections, are effective, but such delivery systems may be difficult to sustain and tolerate over time and have encouraged scientific efforts to develop delivery systems that would bind to components of eye cells and safely extend the therapeutic impact of the medications they carry.

In 2020, the Food and Drug Administration approved an implantable device that can be placed in the eye and release drugs to treat glaucoma. While that device worked for longer periods than drops or injections, prolonged use was shown in some cases to cause eye cell death, requiring patients to revert to eye drops and injections.

The new research showed that artificial intelligence-designed models accurately predicted an effective sequence of amino acids, also known as peptides or small proteins, that would bind to a particular chemical in rabbit eye cells and safely dispense medications over several weeks, reducing the need for frequent, strict treatment schedules. The team specifically investigated peptides that bind to melanin, a compound that provides color to the eye but has the advantage of being widely present throughout specialized structures in eye cells.

The research team noted that other studies investigating drug delivery using peptides have shown how effective this system can be, but they wanted to find peptides that would strongly bind with a widespread eye compound. To do that, the team reasoned that rapid machine learning using artificial intelligence methods could help sort out and predict an effective peptide sequence to try, according to Laura Ensign, Ph.D., the Marcella E. Woll professor of Ophthalmology at the Johns Hopkins University School of Medicine, and co-corresponding author of the paper.

The team started by feeding a machine learning model thousands of data points, including characteristics of amino acids and peptide sequences. These data helped the computer model “learn” the chemical and binding properties of certain amino acid combinations, and in time, how to predict candidate peptide sequences for drug delivery using melanin.

The artificial intelligence model generated 127 peptides that were predicted to have varying abilities to penetrate the specialized cells that house melanin, bind to melanin, and be nontoxic to the cells. Out of these 127 peptides, the model predicted that a peptide called HR97 had the highest success rate of binding. The team also confirmed the properties of these peptides, including better uptake and binding within cells as well as no indication of cell death.

To test the model’s prediction, researchers attached HR97 to the drug brimonidine, which is used to treat glaucoma by lowering inner eye pressure, and injected it into adult rabbit eyes. To determine HR97’s performance, researchers measured the levels of brimonidine in the eye cells by testing the cells’ concentrations of the drug after administering the experimental drug delivery system. They found that high amounts of brimonidine were present for up to one month, indicating that HR97 successfully penetrated cells, bound to melanin, and released the drug over a longer period. Researchers also confirmed that the eye pressure-lowering effect of brimonidine lasted for up to 18 days when bound to HR97, and found no indication of irritation in the rabbits’ eyes.

Ensign says that future studies using artificial intelligence to predict peptides for drug delivery have huge ramifications for other conditions that involve melanin and can be extended to targeting other specialized structures.

“We believe we are well on the way to finding solutions in trying to improve patient care and quality of life using drug delivery systems. The ultimate goal is creating something that we can translate out of the lab and make people’s lives better,” says Ensign.

Moving forward, Ensign says, researchers will need to find ways to further extend the duration of action, test the success rate of the AI model’s drug delivery predictions with other drugs, and determine safety in humans.

Other researchers involved in the study are Henry Hsueh, Usha Rai, Wathsala Liyanage, Yoo Chun Kim, Matthew Appell, Jahnavi Pejavar, Kirby Leo, Charlotte Davison, Patricia Kolodziejski, Ann Mozzer, HyeYoung Kwon, Maanasa Sista, Sri Vishnu Kiran Rompicharla, Malia Edwards, Ian Pitha and Justin Hanes of the Johns Hopkins University School of Medicine; Nicole Anders and Avelina Hemingway of the Johns Hopkins Sidney Kimmel Comprehensive Cancer Center; and Renee Ti Chou and Michael Cummings of the University of Maryland.

This work was supported by funding from the NIH (R01EY026578, R01EY031041, P30CA006973, and S10OD020091), the Robert H. Smith Family Foundation, the Marcella E. Woll and Maryland E-Nnovation Initiative Fund to establish the Marcella E. Woll Professorship in Ophthalmology, Research to Prevent Blindness, a National Eye Institute Training Grant (T32EY007143), a National Science Foundation Award (DGE-1632976) and a National Center for Advancing Translational Sciences grant (UL1TR001079).