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Shirin Nilizadeh
Shirin Nilizadeh
Tyler O'Neal, Staff Editor ACADEMIA April 6, 2023, 4:00 pm

UT Arlington researcher aims to improve online safeguards that protect user privacy

A University of Texas at Arlington computer security researcher has received a prestigious federal grant to determine what technologies and methods work best to attain and retain online security and privacy.

Shirin Nilizadeh, assistant professor in the Department of Computer Science and Engineering, received a $200,000 National Science Foundation grant to study social media discussions and better understand what concerns are about online security and privacy, what technologies and tools they suggest to each other to use and whether they are effective. Nilizadeh called this a “worldwide challenge.”

“People care about their online security and privacy everywhere,” she said. “And sometimes, due to societal and political movements, they become more cautious or aware of the problems, where they go online and on social media, and proactively discuss their concerns and ask for tools and methods that can help protect them.

“We can help as a research community to see what’s working and what isn’t. We can take these research findings to design and develop better online safeguards and to improve the existing security and privacy-preserving systems if they are not secure, effective, and efficient.”

Hong Jiang, chair of the Department of Computer Science and Engineering, said Nilizadeh’s research could further the security of social network tools.

“Everyone is connected to social networks,” Jiang said. “Studying social networks’ discussions and understanding what security measures people are looking for and using allow researchers  to develop and provide such measures to improve online security and privacy.”

Previous Nilizadeh's work showed that social media users extensively discussed the security and privacy threats of video communication tools more people started working from home due to the COVID-19 pandemic. This work showed how misinformation about security and privacy spread on social media platforms.

Nilizadeh previously did work on how job applicants can “hack” hiring systems and improve their standing by using certain words on their applications. She also has studied whether security and privacy applications like content moderation tools are fair toward users from various demographics and backgrounds.

Brown-built model shows how non-drug interventions for patients with Alzheimer’s are both effective, economical

Brown-built model shows how non-drug interventions for patients with Alzheimer’s are both effective, economical

Tyler O'Neal, Staff Editor ACADEMIA April 6, 2023, 7:01 am

A Brown-led research team used a supercomputer simulation to show that compared to usual care, four dementia-care interventions saved up to $13,000 in costs, reduced nursing home admissions, and improved quality of life.

While new drugs to treat Alzheimer’s disease tend to receive the most public attention, many well-researched ways to care for people with dementia don’t involve medication. A new evaluation compared the cost-effectiveness of four non-drug interventions to the usual care received by people with dementia and found that the interventions not only resulted in a better quality of life but also saved money.

In a study published April 6 in Alzheimer's & Dementia: The Journal of the Alzheimer's Association, researchers used a supercomputer simulation model to show that the four dementia-care interventions saved between $2,800 and $13,000 in societal costs, depending on the type of intervention, and all reduced nursing home admissions and improved quality of life compared to usual care.

Alzheimer’s drugs hold great promise, but they still need additional research and improvement, said lead study author Eric Jutkowitz, an associate professor at Brown University’s School of Public Health. In the meantime, he said, several non-drug interventions are effective in clinical trials in improving the quality of life for people with dementia and helping them stay safe at home longer.

“Now that we can show that these effective interventions can also save money, it just makes sense to find ways to make them available to more families,” Jutkowitz said. “These interventions can be used to help people with dementia starting today.”

The four interventions studied included the following: Maximizing Independence at Home, an at-home, care coordination intervention that consists of care planning, skill-building, referrals to services, and careful monitoring; New York University Caregiver, which is implemented in an outpatient clinic and provides caregivers with six counseling sessions over four months plus lifetime ad-hoc support and access to weekly support groups; Alzheimer’s and Dementia Care, in which a health care system provides people living with dementia and their caregivers a needs assessment, individual care plans and round-the-clock access to a care manager; and Adult Day Service Plus, which augments adult day care services with staff providing face-to-face caregiver support, disease education, care management, skill-building, and resource referrals.

Nonpharmacological interventions like these provide family caregivers with knowledge, skills, and support tailored to their care challenges. They have been shown to improve the quality of life for the caregiver and the person living with dementia, as well as to reduce nursing home admissions, and they are not associated with adverse events such as hospitalizations and mortality. For these reasons, nonpharmacological interventions are recommended as first-line therapies for the management of Alzheimer’s and dementia.

While non-drug interventions are well-studied, Jutkowitz said they haven't been widely implemented in clinical care centers. He added that there isn’t currently an infrastructure in place to support these methods of care — for example, there are limited mechanisms for providers to be reimbursed for these types of interventions.

To conduct the study, the researchers used a supercomputer simulation to model the likelihood of nursing home admission for four evidence-based Alzheimer’s and dementia nonpharmacological interventions compared to usual care. For each, the study evaluated societal costs, quality-adjusted life-years, and cost-effectiveness. The inputs in the simulation were based on data from Medicare, clinical trials, and national surveys with families of people with dementia.

Jutkowitz noted that the researchers benefited not only from Brown University supercomputing resources that could handle intensive analytic tasks but also access to data from the government’s Centers for Medicare and Medicaid Services, which was crucial to the analysis.

In addition to finding that the interventions were cost-effective from a societal perspective, the researchers also found that from a healthcare payer perspective, the interventions involved little to no additional cost, compared to usual care, while increasing patient quality of life.

Based on the study findings, the authors concluded that health insurance policies should find ways to incentivize providers and health systems to implement nonpharmacological interventions.

The importance of understanding the cost-effectiveness of non-drug Alzheimer’s and dementia interventions is further highlighted by changes in Medicare payment models and emerging Alzheimer’s therapeutics, the researchers noted. The Centers for Medicare and Medicaid Services is in the process of determining coverage for new Alzheimer’s and related dementia drugs.

“As the Centers for Medicare and Medicaid Services determine coverage for new Alzheimer’s and related dementia drugs, we strongly believe that CMS should also consider the benefits of nonpharmacologic interventions,” Jutkowitz said.

While this study focused on non-drug interventions that reduce nursing home admissions, a future analysis will look at similar interventions that reduce or maintain functional decline and challenging behaviors. The researchers are also working on designing a trial that would test the interventions with patients in a healthcare setting.

Additional Brown contributors included Peter Shewmaker and Gary Epstein-Lubow.

This research was supported by the National Institute on Aging (1R21AG059623-01, 1R01AG060871-01, 1RF1AG069771, R01AG049692).

Tokyo Tech deploys database online aimed at boosting drug design using cyclic peptides

Tokyo Tech deploys database online aimed at boosting drug design using cyclic peptides

Tyler O'Neal, Staff Editor ACADEMIA April 5, 2023, 12:00 pm

CycPeptMPDB, a novel database created by Tokyo Tech researchers focused on the membrane permeability of cyclic peptides, could accelerate the development of drugs based on these promising compounds. This database was created by gathering published information on thousands of cyclic peptides and organizing it neatly in an online-accessible platform. Thanks to its search and visualization capabilities, CycPeptMPDB could pave the way to new super-computational machine-learning methods for screening and designing drugs with cyclic peptides.

One of the greatest challenges in modern drug design is to find compounds that satisfy somewhat contradictory requirements—they need to be small enough to permeate human cell membranes while being large enough to target various protein surfaces and protein–protein interactions. This is a fine balance to achieve—if the compounds are too large, they may not pass through the cell membrane, and their bioavailability would be affected; if they are too small, they would not retain high specificity to the target protein (or proteins).  Scientists estimate that over 80% of all known proteins associated with diseases cannot be targeted by conventional small-molecule drugs or antibody-based drugs. That is why, in recent years, cyclic peptides have become a very active research area. In principle, these compounds can achieve the fine balance required of modern drugs.

A cyclic peptide is a type of organic molecule that consists of amino acids linked together in a circular or lariat shape. What makes them particularly attractive is that they can target intracellular protein–protein interactions, which have been considered “undruggable” for decades. Moreover, cyclic peptides are inexpensive to synthesize compared to antibody-based drugs, prompting many pharmaceutical companies to conduct extensive research on these compounds.

However, one of the biggest hurdles to overcome in cyclic peptide research is that their membrane permeability—which controls their bioavailability and efficiency as drugs—is low in general, and the mechanisms behind this are not completely understood. Thus, during drug design, it is difficult for researchers to select candidate peptides that are likely to make it through the cell membrane. On top of this, there are currently no openly accessible databases documenting the membrane permeabilities of known cyclic peptides.

Against this backdrop, a team of researchers from the Tokyo Institute of Technology (Tokyo Tech), Japan, including Professor Yutaka Akiyama, decided to take a step towards making cyclic peptide research easier for everyone. As explained in their latest paper published in the Journal of Chemical Information and Modeling, the team created an online database called CycPeptMPDB that contains information on thousands of cyclic peptides, including their membrane permeability.

To build the database, they gathered data from previously published papers and pharmaceutical patents. After inspecting over 40 publications, they collected information on 7,334 cyclic peptides with widely different chemical structures. They loaded the membrane permeability values and important physical parameters such as the lipophilicity of these peptides onto the database.

Moreover, to make further analysis and visualization of the molecules possible, the researchers calculated the most likely 3D conformation of each peptide and added it to the database. They also encoded the chemical structure of each cyclic peptide in a novel descriptive notation (called HELM), making it possible to unambiguously refer to any cyclic peptide in the database using a short string of text.

The team has high hopes for its platform and believes that it could become a game changer in the design and development of cyclic peptide drugs. “CycPeptMPDB provides several functions, including data storage, statistics and visualization, searching and analysis, and downloading. We expect it will become a valuable tool to support membrane permeability research on cyclic peptides,” remarks Prof. Akiyama. It is also worth noting, that databases such as CycPeptMPDB are essential for training machine learning models, which can accelerate the selection of drug candidates and reveal hidden patterns in the data.

“We will continue to collect membrane permeability data of cyclic peptides and record them in CycPeptMPDB. Additionally, future improvements to the database’s online analysis platform will include an improved user-friendly interface and more integrative functions,” comments Prof. Akiyama.

  1. German team shows how the Arctic faces problems from legacy industrial contamination, pollutants when permafrost thaws
  2. MIT scientists use supercomputational modeling to design 'ultrastable' materials

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